5MX0
Crystal structure of human fibromodulin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-28 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9282 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 108.110, 98.930, 111.340 |
Unit cell angles | 90.00, 107.39, 90.00 |
Refinement procedure
Resolution | 65.913 - 2.210 |
R-factor | 0.1812 |
Rwork | 0.179 |
R-free | 0.21620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xku |
RMSD bond length | 0.003 |
RMSD bond angle | 0.759 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.913 | 2.270 |
High resolution limit [Å] | 2.210 | 2.210 |
Rmerge | 0.111 | 1.840 |
Rpim | 0.046 | 0.737 |
Number of reflections | 55434 | |
<I/σ(I)> | 9.5 | 1.1 |
Completeness [%] | 99.0 | 99.1 |
Redundancy | 6.8 | 6.9 |
CC(1/2) | 0.998 | 0.523 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 10 mg/ml protein + 26% (w/v) PEG 3350, 200 mM lithium sulphate monohydrate, 100 mM Tris-HCl (pH 8.5) |