5MJ5
Crystal structure of the Retinoid X Receptor alpha in complex with synthetichonokiol derivative 3 and a fragment of the TIF2 co-activator.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.0331 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 68.159, 68.159, 109.719 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.897 - 1.900 |
R-factor | 0.1975 |
Rwork | 0.197 |
R-free | 0.24280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ec9 |
RMSD bond length | 0.001 |
RMSD bond angle | 0.361 |
Data reduction software | iMOSFLM (7.2.1) |
Data scaling software | Aimless (0.5.28) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.10.1-2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 68.160 | 68.160 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.079 | 0.051 | 1.064 |
Number of reflections | 21110 | ||
<I/σ(I)> | 22.1 | ||
Completeness [%] | 99.9 | 99.9 | 99.2 |
Redundancy | 20.9 | 17.9 | 9.8 |
CC(1/2) | 0.999 | 0.999 | 0.510 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277 | 0.1 M PIPES, pH 7.0, 0.1 M NaCl, 22% PEG 2K MME |