5LY2
JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Macrocyclic PEPTIDE Inhibitor CP2_R6Kme3 (13-mer)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-05-20 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.306, 103.747, 142.367 |
Unit cell angles | 90.00, 99.14, 90.00 |
Refinement procedure
Resolution | 48.670 - 2.430 |
R-factor | 0.22 |
Rwork | 0.219 |
R-free | 0.24500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ox0 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.261 |
Data reduction software | HKL-2000 (706E) |
Data scaling software | HKL-2000 (706E) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.665 | 2.470 |
High resolution limit [Å] | 2.430 | 2.430 |
Rmerge | 0.138 | 0.646 |
Number of reflections | 62112 | |
<I/σ(I)> | 9.4167 | 2 |
Completeness [%] | 98.3 | 95 |
Redundancy | 4.4 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 277 | 0.1 M bicine pH 9.0 and 10% w/v polyethylene glycol 6000 |