5LUD
Structure of Cyclophilin A in complex with 2,3-Diaminopyridine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-03-16 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 42.535, 54.477, 86.808 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.140 - 1.250 |
R-factor | 0.1947 |
Rwork | 0.193 |
R-free | 0.21955 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4n1m |
RMSD bond length | 0.025 |
RMSD bond angle | 2.294 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.150 | 1.270 |
High resolution limit [Å] | 1.250 | 1.250 |
Rmerge | 0.065 | 0.594 |
Number of reflections | 55267 | |
<I/σ(I)> | 8.7 | 1 |
Completeness [%] | 97.8 | 89.5 |
Redundancy | 3.7 | 2.7 |
CC(1/2) | 0.443 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 277 | Tris, PEG8000 |