5KZT
Listeria monocytogenes OppA bound to peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-16 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.978 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 100.277, 74.630, 155.061 |
Unit cell angles | 90.00, 109.38, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.850 |
R-factor | 0.16914 |
Rwork | 0.167 |
R-free | 0.20489 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4faj |
RMSD bond length | 0.009 |
RMSD bond angle | 1.321 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.880 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.108 | 0.618 |
Number of reflections | 92580 | |
<I/σ(I)> | 17.3 | 2.3 |
Completeness [%] | 98.4 | 99.2 |
Redundancy | 3.2 | 3 |
CC(1/2) | 0.580 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 300 | Protein solution: 12.0 mg/ml, 0.01 M Tris-HCl pH 8.3, and 10/mg/ml tryptone Crystallization condition: Classics II (Qiagen) D10: 0.1 M Bis-Tris pH 6.5 and 20% (w/v) PEG 5000 MME |