Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5KZT

Listeria monocytogenes OppA bound to peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2016-06-16
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.978
Spacegroup nameC 1 2 1
Unit cell lengths100.277, 74.630, 155.061
Unit cell angles90.00, 109.38, 90.00
Refinement procedure
Resolution30.000 - 1.850
R-factor0.16914
Rwork0.167
R-free0.20489
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4faj
RMSD bond length0.009
RMSD bond angle1.321
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.880
High resolution limit [Å]1.8501.850
Rmerge0.1080.618
Number of reflections92580
<I/σ(I)>17.32.3
Completeness [%]98.499.2
Redundancy3.23
CC(1/2)0.580
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP300Protein solution: 12.0 mg/ml, 0.01 M Tris-HCl pH 8.3, and 10/mg/ml tryptone Crystallization condition: Classics II (Qiagen) D10: 0.1 M Bis-Tris pH 6.5 and 20% (w/v) PEG 5000 MME

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon