5KTI
Structure of cow mincle complexed with KMJ1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-01-24 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 98.348, 98.348, 45.666 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 33.460 - 1.800 |
R-factor | 0.1792 |
Rwork | 0.178 |
R-free | 0.20420 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4zrw |
RMSD bond length | 0.015 |
RMSD bond angle | 0.913 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.460 | 33.460 | 1.830 |
High resolution limit [Å] | 1.800 | 8.990 | 1.800 |
Rmerge | 0.056 | 0.033 | 0.535 |
Number of reflections | 23855 | ||
<I/σ(I)> | 14.5 | ||
Completeness [%] | 99.5 | 98.5 | 94.2 |
Redundancy | 5 | 4.8 | 4.8 |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 295 | protein solution: 10 mg/mL mincle, 5 mM CaCl2, 10 mM Tris (pH 8.0), 25 mM NaCl and 5 mM KMJ-1. Reservoir solution: 20% Peg 4K, 20% 2-Propanol and 0.1 M Sodium Acetate pH=5.6 |