Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5KBY

Crystal structure of dipeptidyl peptidase IV in complex with SYR-472

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Temperature [K]100
Detector technologyCCD
Collection date2007-04-11
DetectorADSC QUANTUM 315r
Wavelength(s)0.987
Spacegroup nameP 1 21 1
Unit cell lengths121.573, 122.165, 143.704
Unit cell angles90.00, 114.57, 90.00
Refinement procedure
Resolution34.570 - 2.240
R-factor0.1764
Rwork0.174
R-free0.21500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3g0b
RMSD bond length0.007
RMSD bond angle1.246
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0025)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.300
High resolution limit [Å]2.2505.5502.250
Rmerge0.0830.0310.541
Total number of observations712558
Number of reflections178650
<I/σ(I)>9.5
Completeness [%]98.999.988.8
Redundancy44.22.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP27722.2% PEG MME 2000, 0.1M Bicine pH 8.5

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon