5JWB
Structure of NDH2 from plasmodium falciparum in complex with NADH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-01-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | I 41 |
Unit cell lengths | 191.530, 191.530, 91.258 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.910 - 2.700 |
R-factor | 0.183 |
Rwork | 0.180 |
R-free | 0.22600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g6g |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (PHENIX.REFINE:1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.092 | 0.743 |
Rmeas | 0.036 | |
Rpim | 0.099 | 1.100 |
Total number of observations | 337713 | |
Number of reflections | 45452 | 4672 |
<I/σ(I)> | 9.7 | |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 7.4 | 7.2 |
CC(1/2) | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | protein (10mg/ml) reservoir solution (2.7M sodium acetate trihydrate, pH screen kit from Hampoton Research at 4.8 or 10.0) |