5JKI
Crystal structure of the first transmembrane PAP2 type phosphatidylglycerolphosphate phosphatase from Bacillus subtilis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-04-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.21458 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 70.066, 76.961, 99.629 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.480 - 2.250 |
R-factor | 0.2022 |
Rwork | 0.201 |
R-free | 0.23110 |
Structure solution method | SAD |
RMSD bond length | 0.014 |
RMSD bond angle | 0.859 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX ((1.10_2152)) |
Refinement software | PHENIX ((1.10_2152)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.480 | 2.320 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.137 | 1.020 |
Number of reflections | 13107 | |
<I/σ(I)> | 11.3 | 2.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 12.8 | 12.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 7 | 293 | 40 %(v/v) PEG-400, 0.1 M HEPES pH 7, 0.1 M lithium citrate tribasic tetra hydrate 0.1M sodium tungstate |