5JD0
crystal structure of ARAP3 RhoGAP domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-23 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97931 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 108.510, 108.510, 95.010 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.364 - 2.300 |
R-factor | 0.2222 |
Rwork | 0.220 |
R-free | 0.25960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ee5 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.916 |
Data reduction software | SCALA |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 76.728 | 38.364 | 2.420 |
High resolution limit [Å] | 2.300 | 7.270 | 2.300 |
Rmerge | 0.077 | 0.642 | |
Rmeas | 0.147 | 0.083 | 0.679 |
Rpim | 0.049 | 0.029 | 0.219 |
Total number of observations | 232624 | 7487 | 34522 |
Number of reflections | 25608 | ||
<I/σ(I)> | 11.1 | 19.7 | 3.8 |
Completeness [%] | 99.1 | 98.6 | 100 |
Redundancy | 9.1 | 8.1 | 9.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 293 | 100 mM HEPES, 10% PEG8000 |