5IX6
X-ray structure of Auoxo3-encapsulated horse spleen apoferritin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-11-17 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | F 4 3 2 |
Unit cell lengths | 180.645, 180.645, 180.645 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 104.300 - 1.850 |
R-factor | 0.18256 |
Rwork | 0.180 |
R-free | 0.22596 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5erk |
RMSD bond length | 0.019 |
RMSD bond angle | 1.752 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 104.300 | 1.880 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.237 | |
Rmeas | 0.243 | |
Rpim | 0.102 | |
Number of reflections | 20893 | |
<I/σ(I)> | 9.2 | 0.8 |
Completeness [%] | 99.5 | 95 |
Redundancy | 6.9 | 3.4 |
CC(1/2) | 0.666 | 0.284 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 293 | Crystals of Auoxo3-encapsulated AFt with diamond-like morphology, suitable for X-ray diffraction data collection, were grown by hanging-drop vapor diffusion technique at 293 K mixing the protein (5-10 mg x mL-1) with equal volumes of a reservoir solution consisting of 0.6-0.8 M (NH4)2SO4, 0.1 M Tris pH 7.4-7.7, 50-60 mM CdSO4. |