5ITY
Crystal Structure of Human NEIL1(P2G) bound to duplex DNA containing Thymine Glycol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-08-14 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.624, 108.706, 169.972 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 91.580 - 2.480 |
R-factor | 0.178 |
Rwork | 0.176 |
R-free | 0.22456 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tdh |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 91.580 | 2.480 |
High resolution limit [Å] | 2.480 | 2.420 |
Rmerge | 0.071 | |
Number of reflections | 46040 | |
<I/σ(I)> | 21.7 | 2.14 |
Completeness [%] | 98.5 | 97.6 |
Redundancy | 4 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.5 | 277 | 0.1M cacodylic acid (pH 7.0), 0.1M NaCl, 0.05M MgCl2, 24%(w/v) PEG 8000 |