Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IM6

Crystal structure of designed two-component self-assembling icosahedral cage I32-28

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2015-07-18
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97920
Spacegroup nameH 3
Unit cell lengths284.170, 284.170, 640.470
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution213.200 - 5.588
R-factor0.2274
Rwork0.226
R-free0.24030
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Rosetta design generated based on the PDB files 2zhz and 3nqn but with differences
RMSD bond length0.009
RMSD bond angle1.086
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]213.200213.2005.730
High resolution limit [Å]5.58024.9605.580
Rmerge0.0770.0280.973
Number of reflections59695
<I/σ(I)>13.4644.141.57
Completeness [%]99.599.195.2
Redundancy5.9
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829812.3% PEG 1500, 18% glycerol

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon