5IM3
Crystal structure of the class I ribonucleotide reductase from Pseudomonas aeruginosa in complex with dATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-02-23 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 267.465, 62.577, 173.761 |
Unit cell angles | 90.00, 127.81, 90.00 |
Refinement procedure
Resolution | 46.085 - 2.298 |
R-factor | 0.1874 |
Rwork | 0.186 |
R-free | 0.21700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zlf |
RMSD bond length | 0.003 |
RMSD bond angle | 0.616 |
Data reduction software | XDS (2013) |
Data scaling software | Aimless (0.5.9) |
Phasing software | PHASER (2.3.0) |
Refinement software | PHENIX ((dev_2328: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.100 | 2.440 |
High resolution limit [Å] | 2.298 | 2.298 |
Rmerge | 0.058 | 0.537 |
Number of reflections | 100813 | |
<I/σ(I)> | 14.8 | 2.1 |
Completeness [%] | 98.7 | 97.1 |
Redundancy | 3.4 | 3.3 |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.7 | 293 | 1 microlitre of protein at 10 or 20 mg/ml in 50 mM Tris-HCl, pH 7.5, 2 mM DTT, 2 mM dATP was mixed with 1 microlitre of a reservoir solution consisting of 0.1 M acetic acid pH 4.7 and 6% PEG 4000. |