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5IJC

The crystal structure of mouse TLR4/MD-2/neoseptin-3 complex

Replaces:  5HG4
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2015-06-17
DetectorADSC QUANTUM 315r
Wavelength(s)0.97918
Spacegroup nameP 1 21 1
Unit cell lengths70.752, 148.559, 131.720
Unit cell angles90.00, 98.30, 90.00
Refinement procedure
Resolution42.360 - 2.570
R-factor0.1946
Rwork0.193
R-free0.23400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ijb
RMSD bond length0.003
RMSD bond angle0.595
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.15.2_3472)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.590
High resolution limit [Å]2.5506.9202.550
Rmerge0.1040.0560.959
Rmeas0.1160.066
Rpim0.0630.0350.606
Total number of observations315421
Number of reflections8408442554086
<I/σ(I)>7.2
Completeness [%]99.698.697.5
Redundancy3.83.73.3
CC(1/2)0.9910.558
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82930.1 M Tris, pH 8.0, 0.2 M lithium chloride, 12% PEG8000

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