5IIM
Crystal structure of the pre-catalytic ternary extension complex of DNA polymerase lambda with an 8-oxo-dG:dA base-pair
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-01-17 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.274, 63.700, 140.725 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.947 - 1.941 |
R-factor | 0.1866 |
Rwork | 0.183 |
R-free | 0.21590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xsn |
RMSD bond length | 0.006 |
RMSD bond angle | 0.898 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.030 | 1.947 |
High resolution limit [Å] | 1.940 | 1.941 |
Rmerge | 0.076 | 0.766 |
Number of reflections | 36628 | |
<I/σ(I)> | 15.1 | 2.4 |
Completeness [%] | 99.7 | |
Redundancy | 5.8 | |
CC(1/2) | 0.994 | 0.913 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 278 | 0.2 M ammonium acetate, 0.1 M sodium citrate pH 4.8, and 3-5% PEG 4000 |