5I61
Crystal structure of the RNA-dependent RNA polymerase of a human picorbirnavirus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 77 |
Detector technology | CMOS |
Collection date | 2011-11-21 |
Detector | NOIR-1 |
Wavelength(s) | 0.9785 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.756, 78.763, 101.449 |
Unit cell angles | 90.00, 91.44, 90.00 |
Refinement procedure
Resolution | 43.795 - 2.400 |
R-factor | 0.1725 |
Rwork | 0.170 |
R-free | 0.22390 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.080 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.310 |
High resolution limit [Å] | 2.270 | 6.160 | 2.270 |
Rmerge | 0.113 | 0.066 | 0.481 |
Rmeas | 0.132 | 0.077 | 0.593 |
Rpim | 0.067 | 0.039 | 0.342 |
Total number of observations | 165286 | ||
Number of reflections | 44254 | ||
<I/σ(I)> | 7.7 | ||
Completeness [%] | 99.3 | 100 | 90.4 |
Redundancy | 3.7 | 3.7 | 2.7 |
CC(1/2) | 0.996 | 0.682 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 200 mM sodium acetate, 100 mM sodium cacodylate pH 6.5, and 30% PEG 8000 |