Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5I4D

1.75 Angstrom Crystal Structure of Superantigen-like Protein, Exotoxin from Staphylococcus aureus, in Complex with Sialyl-LewisX.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2014-10-27
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97856
Spacegroup nameP 21 21 2
Unit cell lengths85.975, 166.881, 34.144
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.940 - 1.750
R-factor0.16287
Rwork0.161
R-free0.20177
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB-4RCO
RMSD bond length0.010
RMSD bond angle1.546
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.780
High resolution limit [Å]1.7501.750
Rmerge0.0910.622
Number of reflections50461
<I/σ(I)>19.53.1
Completeness [%]100.0100
Redundancy7.37
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.3292Protein: 6.1 mg/ml, 0.5M Sodium chloride, 0.01M Tris-HCL (pH 8.3), 2mM Sialyl-LewisX;Screen: JCSG+ (A3), 0.18M tri-Ammonium citrate, 20% (w/v) PEG3350.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon