5HKZ
Crystal Structure of c-Cbl TKBD in complex with SPRY2 peptide (36-60, pY55) Refined to 1.8 A Resolution (P21 form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-04-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.164, 56.572, 58.228 |
Unit cell angles | 90.00, 107.15, 90.00 |
Refinement procedure
Resolution | 39.668 - 1.800 |
R-factor | 0.1642 |
Rwork | 0.162 |
R-free | 0.21260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bum |
RMSD bond length | 0.010 |
RMSD bond angle | 0.996 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.150 | 43.150 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.054 | 0.018 | 0.665 |
Total number of observations | 95633 | 816 | 5436 |
Number of reflections | 28815 | ||
<I/σ(I)> | 16.3 | 58.1 | 1.9 |
Completeness [%] | 99.4 | 97.1 | 99.4 |
Redundancy | 3.3 | 3.3 | 3.2 |
CC(1/2) | 0.999 | 0.999 | 0.652 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 25% (w/v) PEG 2000 MME, 0.1M HEPES |