5FYZ

Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 2-(2-oxo-2,3-dihydro-1H-indol-3-yl)acetonitrile (N10063a)

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I04-1
Synchrotron site	Diamond
Beamline	I04-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2015-05-15
Detector	DECTRIS PILATUS 2M
Spacegroup name	P 65 2 2
Unit cell lengths	141.880, 141.880, 152.080
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	95.575 - 1.750
R-factor	0.203
Rwork	0.202
R-free	0.23090
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	5a3p
RMSD bond length	0.007
RMSD bond angle	1.100
Data reduction software	XDS
Data scaling software	SCALA
Phasing software	DIMPLE
Refinement software	PHENIX ((PHENIX.REFINE))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	122.870	1.800
High resolution limit [Å]	1.750	1.750
Rmerge	0.100	1.500
Number of reflections	90897
<I/σ(I)>	19.4	1.3
Completeness [%]	100.0	100
Redundancy	19.9	20.2

Crystallization Conditions

crystal ID	method	pH	temperature	details
1		7.5		0.1M HEPES PH 7.5 -- 0.8M POTASSIUM PHOSPHATE DIBASIC -- 0.8M SODIUM PHOSPHATE MONOBASIC