5FV1
Crystal structure of hVEGF in complex with VK domain antibody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Collection date | 2013-04-19 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 61.221, 147.128, 175.171 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 73.560 - 2.700 |
R-factor | 0.20819 |
Rwork | 0.205 |
R-free | 0.26056 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | NONE |
RMSD bond length | 0.007 |
RMSD bond angle | 1.202 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 73.560 | 2.850 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.090 | 0.480 |
Number of reflections | 22056 | |
<I/σ(I)> | 18.5 | 3.8 |
Completeness [%] | 99.5 | 100 |
Redundancy | 6.6 | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 8.5 | 277 | 20% PEG3350, 0.1M BIS TRIS PROPANE PH 8.5, 0.2M NA CITRATE 4C |