Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ES3

Co-crystal structure of LDH liganded with oxamate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-02-13
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.92
Spacegroup nameP 21 21 21
Unit cell lengths84.080, 146.630, 284.900
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution80.642 - 2.290
R-factor0.1716
Rwork0.170
R-free0.20280
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4aje
RMSD bond length0.007
RMSD bond angle0.845
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 Overall
Low resolution limit [Å]80.642
High resolution limit [Å]2.290
Rmerge0.127
Number of reflections158462
<I/σ(I)>11.9
Completeness [%]99.7
Redundancy7.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52910.1 M Tris/Bicine pH 8.5, 20 % ethylene glycol, 10 % PEG 8000, 0.02 M of each of sodium formate, ammonium acetate, tri-sodium citrate, sodium/potassium tartrate and sodium oxamate

239149

PDB entries from 2025-07-23

PDB statisticsPDBj update infoContact PDBjnumon