5EKE
Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB (F215A mutant)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X4C |
Synchrotron site | NSLS |
Beamline | X4C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-05-31 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 154.135, 142.243, 102.010 |
Unit cell angles | 90.00, 97.16, 90.00 |
Refinement procedure
Resolution | 34.384 - 3.001 |
R-factor | 0.25 |
Rwork | 0.249 |
R-free | 0.27650 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 0.531 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.5.14) |
Refinement software | PHENIX (dev_2165) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.384 | 34.380 | 3.110 |
High resolution limit [Å] | 3.000 | 11.230 | 3.000 |
Rmerge | 0.045 | 0.026 | 1.263 |
Rpim | 0.025 | 0.015 | 0.696 |
Total number of observations | 182807 | 3256 | 18832 |
Number of reflections | 43376 | ||
<I/σ(I)> | 19.1 | 66.2 | 1.1 |
Completeness [%] | 99.4 | 95.4 | 97.8 |
Redundancy | 4.2 | 3.9 | 4.2 |
CC(1/2) | 0.999 | 0.997 | 0.693 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 295 | 600 nL protein + 300 nL of reservoir composed as follows: containing 16-18% PEG600 (v/v), 0.12 M Tris/HCl, pH 9.0, 0.1 M NaCl and 1 mM TCEP) under 1 uL of silicone oil, in 96-well Axygen sitting-drop plates. Crystals typically appeared after 1-2 days and grew to a final size of approximately 150 um in each dimension |