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5EKE

Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB (F215A mutant)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X4C
Synchrotron siteNSLS
BeamlineX4C
Temperature [K]100
Detector technologyCCD
Collection date2014-05-31
DetectorMAR CCD 165 mm
Wavelength(s)0.979
Spacegroup nameC 1 2 1
Unit cell lengths154.135, 142.243, 102.010
Unit cell angles90.00, 97.16, 90.00
Refinement procedure
Resolution34.384 - 3.001
R-factor0.25
Rwork0.249
R-free0.27650
Structure solution methodSAD
RMSD bond length0.009
RMSD bond angle0.531
Data reduction softwareiMOSFLM
Data scaling softwareAimless (0.5.14)
Refinement softwarePHENIX (dev_2165)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]34.38434.3803.110
High resolution limit [Å]3.00011.2303.000
Rmerge0.0450.0261.263
Rpim0.0250.0150.696
Total number of observations182807325618832
Number of reflections43376
<I/σ(I)>19.166.21.1
Completeness [%]99.495.497.8
Redundancy4.23.94.2
CC(1/2)0.9990.9970.693
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP9295600 nL protein + 300 nL of reservoir composed as follows: containing 16-18% PEG600 (v/v), 0.12 M Tris/HCl, pH 9.0, 0.1 M NaCl and 1 mM TCEP) under 1 uL of silicone oil, in 96-well Axygen sitting-drop plates. Crystals typically appeared after 1-2 days and grew to a final size of approximately 150 um in each dimension

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PDB entries from 2024-10-30

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