5EIR
Co-crystal structure of eIF4E with nucleotide mimetic inhibitor.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-05-15 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 0.9173 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 38.250, 52.120, 123.670 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.029 - 2.690 |
R-factor | 0.2489 |
Rwork | 0.248 |
R-free | 0.27230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2V8Y chain A |
RMSD bond length | 0.009 |
RMSD bond angle | 1.245 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 123.670 | 48.029 | 2.840 |
High resolution limit [Å] | 2.690 | 8.510 | 2.690 |
Rmerge | 0.042 | 0.359 | |
Rmeas | 0.193 | ||
Rpim | 0.106 | 0.029 | 0.235 |
Total number of observations | 19790 | 739 | 2431 |
Number of reflections | 6814 | ||
<I/σ(I)> | 5.5 | 9.1 | 3 |
Completeness [%] | 93.8 | 97.2 | 85.8 |
Redundancy | 2.9 | 2.7 | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 21-31% PEG 8000, 1???3% (NH4)2SO4, 100 mM HEPES, pH 7.5, 1 round of seeding. Crystals replaced in to above conditions without (NH4)2SO4 prior to freezing. |