5EAN
Crystal structure of Dna2 in complex with a 5' overhang DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-21 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.987 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 87.153, 118.488, 149.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.360 |
R-factor | 0.2094 |
Rwork | 0.208 |
R-free | 0.24600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eaw |
RMSD bond length | 0.010 |
RMSD bond angle | 1.554 |
Data scaling software | HKL-2000 |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.430 |
High resolution limit [Å] | 2.350 | 5.060 | 2.350 |
Rmerge | 0.126 | 0.080 | 0.656 |
Rmeas | 0.142 | 0.090 | 0.756 |
Rpim | 0.063 | 0.039 | 0.366 |
Total number of observations | 316314 | ||
Number of reflections | 63876 | ||
<I/σ(I)> | 5.3 | ||
Completeness [%] | 99.0 | 97.4 | 98.6 |
Redundancy | 5 | 4.9 | 3.9 |
CC(1/2) | 0.994 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 80 mM MES, 20 mM CaCl2, 10 mM spermidine, 4-9 % isopropanol, 0.5 mM TCEP, pH 6.5, and 1 mM ADP |