5E8M
Crystal structure of human heparanase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-01-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.920 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 46.765, 70.972, 78.948 |
Unit cell angles | 90.00, 94.17, 90.00 |
Refinement procedure
Resolution | 46.640 - 1.750 |
R-factor | 0.16596 |
Rwork | 0.164 |
R-free | 0.19989 |
Structure solution method | SIRAS |
RMSD bond length | 0.015 |
RMSD bond angle | 1.735 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | SHELX |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.640 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.050 | 0.847 |
Number of reflections | 49329 | |
<I/σ(I)> | 12 | 1.7 |
Completeness [%] | 100.0 | 99.8 |
Redundancy | 4.2 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1 M MES pH 5.5, 0.1 M MgCl2, 17% PEG3350 |