5E4A
Human transthyretin (TTR) complexed with (2,7-Dichloro-fluoren-9-ylideneaminooxy)-acetic acid.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-01-30 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.87006 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 43.210, 85.990, 63.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.990 - 1.330 |
R-factor | 0.14202 |
Rwork | 0.139 |
R-free | 0.19239 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tq8 |
RMSD bond length | 0.028 |
RMSD bond angle | 2.452 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0123) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.210 | 1.360 |
High resolution limit [Å] | 1.330 | 1.330 |
Rmerge | 0.076 | 1.860 |
Number of reflections | 55377 | |
<I/σ(I)> | 14.92 | 1.22 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 9.12 | 9.23 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | Protein: TTR at 5 mg/ml + 1.6 milli-M inhibitor. Precipitant: 18% PEG4K, 0.08M imidazole malate, pH 6.0 and 13.5% PEG10K, 0.06M ammonium acetate, pH 4.5 Cryoprotectant: 10% diethylene glycol + 5% MPD + 15% 2,3-butanediol + 5% 1,4-dioxane, 25% MPEG 5K, 0.1 M mixed (Na acetate, ADA, Bicine - 60% at pH 4/40% at pH 10) 1 milli-M inhibitor. |