5DQO
Crystal structure of Y347F mutant of human primase p58 iron-sulfur cluster domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 |
Unit cell lengths | 60.398, 60.398, 246.729 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.140 - 2.300 |
R-factor | 0.25174 |
Rwork | 0.251 |
R-free | 0.27490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3l9q |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 82.243 | 50.000 | 2.530 |
High resolution limit [Å] | 2.300 | 6.240 | 2.480 |
Rmerge | 0.058 | 0.033 | 0.493 |
Number of reflections | 42683 | ||
<I/σ(I)> | 12.8 | 2.1 | |
Completeness [%] | 92.5 | 99.1 | 89.6 |
Redundancy | 4.5 | 5.5 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 300 mM lithium sulfate, 100 mM Tris, pH 8.5, 20% PEG3350 |