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5DC3

Complex of yeast 80S ribosome with non-modified eIF5A

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-09-10
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.148
Spacegroup nameP 1 21 1
Unit cell lengths438.230, 289.330, 305.470
Unit cell angles90.00, 98.95, 90.00
Refinement procedure
Resolution190.477 - 3.250
R-factor0.2533
Rwork0.252
R-free0.30090
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4v88
RMSD bond length0.006
RMSD bond angle1.024
Data scaling softwareXSCALE
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]190.4773.300
High resolution limit [Å]3.250175.0003.250
Rmerge0.4111.5302.179
Rmeas0.4341.6882.356
Total number of observations9652670
Number of reflections1176614352321
<I/σ(I)>6.381.160.98
Completeness [%]100.030100
Redundancy8.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7277.15Tris-acetate pH7.0, potassium thiocyanate, magnesium acetate, glycerol, spermidine, PEG 20000

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