5D7F
X-ray structure of Ca(2+)-S100B with human RAGE-derived W72 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-11-05 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 35.089, 59.824, 47.563 |
Unit cell angles | 90.00, 111.65, 90.00 |
Refinement procedure
Resolution | 44.200 - 1.300 |
R-factor | 0.1583 |
Rwork | 0.157 |
R-free | 0.18320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2h61 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.671 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 44.200 |
High resolution limit [Å] | 1.170 |
Number of reflections | 58236 |
<I/σ(I)> | 23.2 |
Completeness [%] | 97.9 |
Redundancy | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.8 | 293 | 100mM Na cacodylate pH 6.8, 22% w/v PEG 3350, 5mM CaCl2 |