5D0C
Crystal Structure of the first bromodomain of human BRD4 in complex with benzo[cd]indol-2(1H)-one ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-08 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97915 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.030, 46.270, 47.440 |
Unit cell angles | 90.00, 96.74, 90.00 |
Refinement procedure
Resolution | 47.110 - 1.490 |
R-factor | 0.1654 |
Rwork | 0.165 |
R-free | 0.18330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mxf |
RMSD bond length | 0.011 |
RMSD bond angle | 1.583 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.9) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0124) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.110 | 47.110 | 1.520 |
High resolution limit [Å] | 1.490 | 8.180 | 1.490 |
Rmerge | 0.060 | 0.059 | 0.100 |
Rpim | 0.026 | 0.035 | 0.041 |
Total number of observations | 134610 | 385 | 6788 |
Number of reflections | 19102 | ||
<I/σ(I)> | 23.9 | 21.3 | 15.2 |
Completeness [%] | 90.8 | 61 | 96.5 |
Redundancy | 7 | 4.3 | 6.9 |
CC(1/2) | 0.996 | 0.984 | 0.993 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 20% PEG3350, 0.2M NaNO3, 0.1M HEPES, 10% EtGhly,pH 7.5 |