5CPE
Crystal Structure of the first bromodomain of human BRD4 in complex with benzo[cd]indol-2(1H)-one ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | OTHER |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-03-27 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.97776 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.060, 45.820, 47.740 |
Unit cell angles | 90.00, 96.72, 90.00 |
Refinement procedure
Resolution | 47.410 - 1.620 |
R-factor | 0.1607 |
Rwork | 0.159 |
R-free | 0.18680 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.657 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.9) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0124) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.410 | 47.410 | 1.640 |
High resolution limit [Å] | 1.620 | 8.700 | 1.620 |
Rmerge | 0.047 | 0.068 | 0.083 |
Rpim | 0.020 | 0.028 | 0.035 |
Total number of observations | 103425 | 781 | 5423 |
Number of reflections | 16363 | ||
<I/σ(I)> | 31.5 | 55.1 | 17.5 |
Completeness [%] | 98.5 | 99.5 | 98 |
Redundancy | 6.3 | 6.4 | 6.5 |
CC(1/2) | 0.998 | 0.990 | 0.995 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 | 277 | 20% PEG3350, 0.2M NaNO3, 0.1M HEPES,10% EtGhly, pH7.2 |