5CIY
Structural basis of the recognition of H3K36me3 by DNMT3B PWWP domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9801 |
Spacegroup name | H 3 2 |
Unit cell lengths | 95.335, 95.335, 314.688 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.554 - 1.594 |
R-factor | 0.1664 |
Rwork | 0.165 |
R-free | 0.18830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 9mht |
RMSD bond length | 0.006 |
RMSD bond angle | 1.161 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.2) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.690 | |
High resolution limit [Å] | 1.590 | 4.760 | 1.590 |
Rmerge | 0.045 | 0.024 | 0.694 |
Rmeas | 0.049 | 0.026 | 0.808 |
Total number of observations | 477758 | ||
Number of reflections | 72764 | 2864 | 10955 |
<I/σ(I)> | 25.05 | 53.13 | 2.08 |
Completeness [%] | 98.5 | 96.4 | 92.7 |
Redundancy | 6.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 298 | AMMONIUM SULFATE 1.8 M, CITRATE 50mM |