Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5CDO

3.15A structure of QPT-1 with S.aureus DNA gyrase and DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2011-06-22
DetectorADSC QUANTUM 315
Wavelength(s)0.97627
Spacegroup nameP 1 21 1
Unit cell lengths90.472, 170.211, 124.579
Unit cell angles90.00, 102.75, 90.00
Refinement procedure
Resolution58.415 - 3.150
R-factor0.2163
Rwork0.215
R-free0.24650
RMSD bond length0.005
RMSD bond angle0.972
Data scaling softwareAimless (3.3.16)
Phasing softwarePHENIX
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]58.42058.4203.260
High resolution limit [Å]3.15012.2003.150
Rmerge0.1260.0620.414
Rpim0.0870.0430.286
Total number of observations185026315418472
Number of reflections62354
<I/σ(I)>7.715.42.8
Completeness [%]98.294.998.7
Redundancy32.93
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH6.2293150mM BisTris pH6.2, 11% PEG 5000 MME

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon