5C7T
Crystal Structure of the Bdellovibrio bacteriovorus Nucleoside Diphosphate Sugar Hydrolase in complex with ADP-ribose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ DW |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2010-06-24 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.541 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 75.594, 103.402, 51.623 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.800 - 2.060 |
R-factor | 0.1845 |
Rwork | 0.181 |
R-free | 0.24500 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5c7q |
RMSD bond length | 0.015 |
RMSD bond angle | 1.886 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | REFMAC (5.8.0049) |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.130 |
High resolution limit [Å] | 2.060 | 4.440 | 2.060 |
Rmerge | 0.095 | 0.058 | 0.525 |
Total number of observations | 130858 | ||
Number of reflections | 24431 | ||
<I/σ(I)> | 11.9 | ||
Completeness [%] | 95.0 | 99.5 | 68.9 |
Redundancy | 5.4 | 6.7 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 1.75-2.0 M ammonium sulfate, 0.1 M HEPES pH 7.0, and 0-0.5% PEG 8000 |