5C4Q
Crystal Structure Analysis of bromodomain from Leishmania donovani complexed with bromosporine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2015-06-09 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 88.916, 34.385, 86.463 |
Unit cell angles | 90.00, 117.58, 90.00 |
Refinement procedure
Resolution | 19.160 - 1.932 |
R-factor | 0.1842 |
Rwork | 0.181 |
R-free | 0.23980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4hbw |
RMSD bond length | 0.012 |
RMSD bond angle | 1.032 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 1.960 |
High resolution limit [Å] | 1.930 | 5.210 | 1.930 |
Rmerge | 0.094 | 0.055 | 0.445 |
Rmeas | 0.109 | 0.063 | 0.557 |
Rpim | 0.055 | 0.032 | 0.329 |
Total number of observations | 61331 | ||
Number of reflections | 16741 | ||
<I/σ(I)> | 7.2 | ||
Completeness [%] | 94.9 | 99.5 | 61.6 |
Redundancy | 3.7 | 3.8 | 2 |
CC(1/2) | 0.996 | 0.756 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 2.4 M sodium malonate |