5C0B
1E6 TCR in complex with HLA-A02 carrying RQFGPDFPTI
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-03-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97630 |
Spacegroup name | P 1 |
Unit cell lengths | 43.940, 100.280, 122.440 |
Unit cell angles | 96.98, 98.05, 96.53 |
Refinement procedure
Resolution | 42.760 - 2.030 |
R-factor | 0.194 |
Rwork | 0.192 |
R-free | 0.23070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3UTQ for the MHC part and 4UTQ for the TCR part. |
RMSD bond length | 0.018 |
RMSD bond angle | 1.923 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER (2.1.4) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.760 | 42.760 | 2.080 |
High resolution limit [Å] | 2.030 | 9.080 | 2.030 |
Rmerge | 0.040 | 0.268 | |
Rmeas | 0.069 | ||
Rpim | 0.046 | 0.024 | 0.428 |
Total number of observations | 253296 | 2991 | 17666 |
Number of reflections | 128366 | ||
<I/σ(I)> | 8 | 16.9 | 2 |
Completeness [%] | 97.6 | 97.6 | 96.7 |
Redundancy | 2 | 2.1 | 1.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1M HEPES, pH 7.5, 15% PEG 4000, 0.2M sodium acetate |