5BS8
Crystal structure of a topoisomerase II complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-30 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 108.357, 83.070, 129.856 |
Unit cell angles | 90.00, 109.33, 90.00 |
Refinement procedure
Resolution | 102.252 - 2.399 |
R-factor | 0.1976 |
Rwork | 0.196 |
R-free | 0.23290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xkk |
RMSD bond length | 0.004 |
RMSD bond angle | 0.686 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 102.300 | 2.485 |
High resolution limit [Å] | 2.399 | 2.399 |
Rmerge | 0.088 | |
Number of reflections | 83492 | |
<I/σ(I)> | 10.66 | 0.99 |
Completeness [%] | 97.7 | 93.22 |
Redundancy | 3.4 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 294 | 100 mM Tris-HCl, 13-15% PEG 4000, 200 mM MgCl2, 6.25% PEG 400 |