5BKB
Crystal structure of AAD-1 in complex with (R)-dichlorprop, Mn(II), and 2-oxoglutarate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-21 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9786 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 85.850, 97.804, 69.881 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.196 - 1.582 |
R-factor | 0.1635 |
Rwork | 0.162 |
R-free | 0.19720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1gqw |
RMSD bond length | 0.011 |
RMSD bond angle | 1.249 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 85.900 | 1.587 |
High resolution limit [Å] | 1.580 | 1.580 |
Rmerge | 0.956 | |
Number of reflections | 80901 | 790 |
<I/σ(I)> | 17.5 | 2.1 |
Completeness [%] | 100.0 | 95.8 |
Redundancy | 8.1 | 7.9 |
CC(1/2) | 0.999 | 0.786 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 277 | 25% PEG 3350 0.3M LiSO4 0.1M Bicine pH 9.0 8 mg/mL AAD-1 Cryo: 15% glycerol |