5B4W
Crystal structure of Plexin inhibitor complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-07-03 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 92.426, 217.924, 106.475 |
Unit cell angles | 90.00, 115.30, 90.00 |
Refinement procedure
Resolution | 40.805 - 2.600 |
R-factor | 0.2266 |
Rwork | 0.225 |
R-free | 0.26530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ol2 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.014 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.5) |
Refinement software | PHENIX ((dev_2341: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.150 | 0.737 |
Number of reflections | 116573 | |
<I/σ(I)> | 10 | 1.21 |
Completeness [%] | 97.2 | 88.7 |
Redundancy | 3 | 2.3 |
CC(1/2) | 0.570 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.2 | 293 | 0.1M tri-sodium citrate, 13% PEG 8000 |