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5ARG

SMYD2 in complex with SGC probe BAY-598

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2015-01-21
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 21 21
Unit cell lengths52.343, 69.600, 131.115
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.720 - 1.990
R-factor0.2322
Rwork0.230
R-free0.27318
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tg5
RMSD bond length0.017
RMSD bond angle2.033
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6102.110
High resolution limit [Å]1.9901.990
Rmerge0.1000.820
Number of reflections33656
<I/σ(I)>14.392.41
Completeness [%]99.999.5
Redundancy6.58
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1727722% PEG 3350, 100 MMOL HEPES PH 7.0. CRYO BUFFER CONTAINS AN ADDTIONAL 20% GLYCEROL AND 1 MMOL LIGAND. OTHER CRYSTALISATION REMARKS:4 MILLIMOLAR COFACTOR SAM ADDED AND MIXTURE INCUBATED FOR 2 HOURS AT 4 DEGREE CELSIUS PRIOR TO CRYSTALLIZATION. CO- COMPLEX WITH BAY-598 FORMED BY SOAKING SMYD2-SAM CRYSTALS WITH 5 MILLIMOLAR LIGAND FOR 4 DAYS.

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PDB entries from 2024-11-06

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