5ARG
SMYD2 in complex with SGC probe BAY-598
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-01-21 |
Detector | DECTRIS PILATUS 6M |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.343, 69.600, 131.115 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.720 - 1.990 |
R-factor | 0.2322 |
Rwork | 0.230 |
R-free | 0.27318 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tg5 |
RMSD bond length | 0.017 |
RMSD bond angle | 2.033 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.610 | 2.110 |
High resolution limit [Å] | 1.990 | 1.990 |
Rmerge | 0.100 | 0.820 |
Number of reflections | 33656 | |
<I/σ(I)> | 14.39 | 2.41 |
Completeness [%] | 99.9 | 99.5 |
Redundancy | 6.58 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 7 | 277 | 22% PEG 3350, 100 MMOL HEPES PH 7.0. CRYO BUFFER CONTAINS AN ADDTIONAL 20% GLYCEROL AND 1 MMOL LIGAND. OTHER CRYSTALISATION REMARKS:4 MILLIMOLAR COFACTOR SAM ADDED AND MIXTURE INCUBATED FOR 2 HOURS AT 4 DEGREE CELSIUS PRIOR TO CRYSTALLIZATION. CO- COMPLEX WITH BAY-598 FORMED BY SOAKING SMYD2-SAM CRYSTALS WITH 5 MILLIMOLAR LIGAND FOR 4 DAYS. |