5A3T
Crystal structure of human PLU-1 (JARID1B) in complex with KDM5-C49 (2-(((2-((2-(dimethylamino)ethyl)(ethyl)amino)-2-oxoethyl)amino)methyl) isonicotinic acid).
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-01-26 |
| Detector | DECTRIS PILATUS 6M |
| Spacegroup name | P 65 2 2 |
| Unit cell lengths | 141.852, 141.852, 151.509 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 122.850 - 1.900 |
| R-factor | 0.20046 |
| Rwork | 0.199 |
| R-free | 0.22039 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 51AF |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.497 |
| Data reduction software | XDS |
| Data scaling software | SCALA |
| Phasing software | CCP4-AUTOMR |
| Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 47.710 | 2.000 |
| High resolution limit [Å] | 1.900 | 1.900 |
| Rmerge | 0.100 | 1.500 |
| Number of reflections | 71027 | |
| <I/σ(I)> | 23.4 | 2.3 |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 22.3 | 22.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | 8 | 0.1M HEPES PH 8.0, 0.8M POTASSIUM PHOSPHATE-DIBASIC, 0.8M SODIUM PHOSPHATE MONOBASIC |
