5ZG6
Crystal structure of beta-lactamase PenP mutant-E166Y in complex with cephaloridine as "post-acylation" intermediate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-08-09 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 43.292, 46.459, 65.981 |
Unit cell angles | 77.43, 75.53, 69.34 |
Refinement procedure
Resolution | 43.060 - 2.000 |
R-factor | 0.21075 |
Rwork | 0.208 |
R-free | 0.25845 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4blm |
RMSD bond length | 0.008 |
RMSD bond angle | 1.552 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.200 | 63.200 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.113 | 0.067 | 0.313 |
Rmeas | 0.135 | 0.082 | 0.381 |
Rpim | 0.073 | 0.046 | 0.213 |
Number of reflections | 29472 | 1537 | 1307 |
<I/σ(I)> | 8 | ||
Completeness [%] | 94.0 | 97.6 | 83.9 |
Redundancy | 3.3 | 3.1 | 2.8 |
CC(1/2) | 0.992 | 0.864 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 0.1M Tris pH8.0, 25% PEG 3350, 0.4M ammonium acetate |