5ZG6
Crystal structure of beta-lactamase PenP mutant-E166Y in complex with cephaloridine as "post-acylation" intermediate
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-08-09 |
| Detector | DECTRIS PILATUS 300K |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 1 |
| Unit cell lengths | 43.292, 46.459, 65.981 |
| Unit cell angles | 77.43, 75.53, 69.34 |
Refinement procedure
| Resolution | 43.060 - 2.000 |
| R-factor | 0.21075 |
| Rwork | 0.208 |
| R-free | 0.25845 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4blm |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.552 |
| Data reduction software | HKL-3000 |
| Data scaling software | SCALEPACK |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 63.200 | 63.200 | 2.030 |
| High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
| Rmerge | 0.113 | 0.067 | 0.313 |
| Rmeas | 0.135 | 0.082 | 0.381 |
| Rpim | 0.073 | 0.046 | 0.213 |
| Number of reflections | 29472 | 1537 | 1307 |
| <I/σ(I)> | 8 | ||
| Completeness [%] | 94.0 | 97.6 | 83.9 |
| Redundancy | 3.3 | 3.1 | 2.8 |
| CC(1/2) | 0.992 | 0.864 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 289 | 0.1M Tris pH8.0, 25% PEG 3350, 0.4M ammonium acetate |






