5Z3N
Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base 5fC pair with dA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-12-15 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 0.9793 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 107.947, 107.947, 90.121 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 93.480 - 1.910 |
R-factor | 0.18568 |
Rwork | 0.183 |
R-free | 0.22933 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dfk |
RMSD bond length | 0.010 |
RMSD bond angle | 1.550 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 93.490 | 1.940 |
High resolution limit [Å] | 1.910 | 1.910 |
Number of reflections | 42010 | |
<I/σ(I)> | 18.69 | |
Completeness [%] | 99.8 | |
Redundancy | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7 | 293.15 | 0.05 M sodium cacodylate (pH 7.0), 0.2 M ammonium acetate, 0.01 M magnesium acetate, 24% PEG 8000 |