5YY9
Crystal structure of Tandem Tudor Domain of human UHRF1 in complex with LIG1-K126me3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 27.105, 97.349, 132.529 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.228 - 2.653 |
R-factor | 0.2367 |
Rwork | 0.231 |
R-free | 0.28770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3db3 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.812 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.670 | 2.780 |
High resolution limit [Å] | 2.650 | 2.650 |
Rmerge | 0.120 | 0.700 |
Number of reflections | 40019 | |
<I/σ(I)> | 8.5 | 2.4 |
Completeness [%] | 97.0 | 95.4 |
Redundancy | 3.8 | 3.8 |
CC(1/2) | 0.990 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 00 mM Tris-HCl (pH 7.0), 200 mM tri-potassium phosphate and 20% (w/v) PEG 3350 |