Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YPD

Mycobacterium Tuberculosis Methionine aminopeptidase type 1c (C105N mutant) in complex with Methionine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2015-09-01
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54
Spacegroup nameP 1 21 1
Unit cell lengths49.226, 44.909, 57.295
Unit cell angles90.00, 94.17, 90.00
Refinement procedure
Resolution28.570 - 1.620
R-factor0.1461
Rwork0.144
R-free0.18180
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1yj3
RMSD bond length0.021
RMSD bond angle2.106
Data reduction softwareDENZO (2.3.1)
Data scaling softwareSCALEPACK (2.2.0)
Phasing softwareHKL-2000
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]28.57030.0001.680
High resolution limit [Å]1.6203.4901.620
Rmerge0.0440.0370.200
Rmeas0.0620.0520.283
Rpim0.0440.0370.200
Number of reflections2950658525139
<I/σ(I)>34
Completeness [%]90.794.783.2
Redundancy1.91.91.9
CC(1/2)0.9960.9930.896
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52980.1M Hepes, 27% Peg 3350, 3% Glycerol

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon