5YG4
Plasmodium vivax SHMT bound with PLP-glycine and S-GS849
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER D8 QUEST |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2017-07-21 |
Detector | BRUKER PHOTON 100 |
Wavelength(s) | 1.54 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 100.848, 58.207, 234.497 |
Unit cell angles | 90.00, 89.99, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.300 |
R-factor | 0.2211 |
Rwork | 0.215 |
R-free | 0.27800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tmr |
RMSD bond length | 0.011 |
RMSD bond angle | 1.567 |
Data scaling software | Aimless (0.5.21) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 19.640 | 2.360 |
High resolution limit [Å] | 2.300 | 10.290 | 2.300 |
Rmerge | 0.071 | 0.040 | 0.287 |
Rmeas | 0.077 | 0.053 | 0.335 |
Rpim | 0.029 | 0.034 | 0.171 |
Number of reflections | 60621 | 515 | 4414 |
<I/σ(I)> | 17 | ||
Completeness [%] | 99.5 | 69.5 | 99.9 |
Redundancy | 6.3 | 1.8 | 3.6 |
CC(1/2) | 0.998 | 0.996 | 0.918 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 8.5 | 298 | PEG 4000, 0.06-0.12M NaCl, 0.1M Tris-HCl pH 8.5 |