Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YCD

Crystal structure of Poecilia reticulata adenylate kinase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 7A (6B, 6C1)
Synchrotron sitePAL/PLS
Beamline7A (6B, 6C1)
Temperature [K]100
Detector technologyCCD
Collection date2017-07-29
DetectorADSC QUANTUM 270
Wavelength(s)0.979933
Spacegroup nameP 21 21 21
Unit cell lengths40.790, 81.505, 120.123
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution31.178 - 1.800
R-factor0.1686
Rwork0.167
R-free0.20910
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5x6k
RMSD bond length0.007
RMSD bond angle1.193
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.860
High resolution limit [Å]1.8001.800
Rpim0.0270.193
Number of reflections379993759
<I/σ(I)>28.015.13
Completeness [%]99.9100
Redundancy14.214.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29327.5% PEG3350, 0.1M Citric acid

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon