Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YC5

Crystal structure of human IgG-Fc in complex with aglycan and optimized Fc gamma receptor IIIa

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-5A
Synchrotron sitePhoton Factory
BeamlineBL-5A
Temperature [K]100
Detector technologyCCD
Collection date2016-12-08
DetectorADSC QUANTUM 315r
Wavelength(s)1.000
Spacegroup nameP 21 21 21
Unit cell lengths72.790, 101.420, 122.600
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.900 - 2.710
R-factor0.21197
Rwork0.209
R-free0.27294
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ay4
RMSD bond length0.016
RMSD bond angle1.984
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.9002.840
High resolution limit [Å]2.7102.710
Rmerge0.1210.848
Rpim0.0580.370
Number of reflections253953324
<I/σ(I)>9.62
Completeness [%]100.0100
Redundancy5.96.2
CC(1/2)0.9950.842
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.4293.1520mM Tris-HCl, 100mM NaCl, 14% PEG 3350

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon