5Y5E
Crystal structure of phospholipase A2 with inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | OXFORD DIFFRACTION ENHANCE ULTRA |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-09 |
Detector | OXFORD RUBY CCD |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 2 2 |
Unit cell lengths | 48.726, 61.063, 63.356 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 18.780 - 1.800 |
R-factor | 0.1942 |
Rwork | 0.193 |
R-free | 0.22500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5wzm |
RMSD bond length | 0.011 |
RMSD bond angle | 1.617 |
Data reduction software | CrysalisPro |
Data scaling software | Aimless (0.1.30) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 18.780 | 18.780 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.060 | 0.025 | 0.448 |
Rmeas | 0.064 | 0.027 | 0.495 |
Rpim | 0.020 | 0.011 | 0.207 |
Number of reflections | 18109 | 159 | 1025 |
<I/σ(I)> | 24.8 | ||
Completeness [%] | 99.9 | 89.3 | 98.9 |
Redundancy | 9.5 | 5.8 | 5.6 |
CC(1/2) | 0.999 | 0.998 | 0.880 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277 | 2.2M Sodium chloride, 0.1M BIS-TRIS propane pH 7.0 |